YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160862929, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPFCLTIR RIWPQALSLK SLSRTLLAAF GLCAALIISA APAFAAPATG EFVADKRCEL  60
   61 FQSKNKQTNP DQWQSNIGER YPVLEILGNS AKPDWLRVRT NAVKSPMRWI SGACGQYLSN 120
  121 VAGSNVSTPA TAVEPAQTTT ASDIKAKSRD GLKEHGTPEK RQGDQCRIGG EFDANVLALS 180
  181 WQSTFCELYG RRKAECRALS QTPESSQWQH FSLHGLWPNK QQCGTRYGYC STVKLQPNDF 240
  241 CTYPEFELNP SVRKNLEEVM PSAQYGTCLE RHEWWKHGTC RSQDPNEYFL LATQLTQAVN 300
  301 ASAWVQKFIH NNIGKSVSKS ELNQSFDSSF GQGAHAKMSL ECGKGLLSEI RINLPEVIKA 360
  361 SDSLPSLLAK ANKAGRGSCP ETIMIDNAN

Type	Start	End	Confidence
Signal Peptide	1	45	0.99
N-region	1	36
H-region	37	42
C-region	43	45
Cleavage Site	45	46
Non-Cytoplasmic	46	389	0.99