YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113902835, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRTEHALLV TSISANQAEP PQDGLVGHVI ELVERLGGPG AGLAVALENL FPPIPSEVIL  60
   61 PLAGFVAGQG RMSVVSAIFW TTLGSLLGAL ALYYIGAVFG RERMRAIAAR LPLVKLSDVD 120
  121 KTEEWFLRHG VKAVFFGRMI PIFRSMISIP AGVERMPVWT FVVYTTLGSL IWNTTFVMAG 180
  181 YLLGDNWHLV EGYTGVLQNV VILACVAGLV WFVVTRLRRS RTTGGVLPNG PEDEFSAPLP 240
  241 PVDGVPDPQG RGTLYRSSWS KDTTVG

Type	Start	End	Confidence
Cytoplasmic	1	44	0.66
Transmembrane Helix	45	60	0.46
Non-Cytoplasmic	61	76	0.60
Transmembrane Helix	77	97	0.94
Cytoplasmic	98	157	0.82
Transmembrane Helix	158	182	0.82
Non-Cytoplasmic	183	194	0.82
Transmembrane Helix	195	214	0.96
Cytoplasmic	215	266	0.96