YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113943553, gi...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYSRSRSSG DVSPLMAAAL PGERQWRGSP LPILGEFTVS LPPLVEPAAE LTVDEIRRYS  60
   61 RHLIIPDVGV EGQKRLKNAR VLCVGAGGLG SPALMYLAAA GVGTLGIVDF DTVDESNLQR 120
  121 QIIHGVSDVG RAKAESASAS IREINPLVEV KIHNTALDRD NVKEIFAQYD LIVDGTDNFA 180
  181 TRYLVNDAAV LLGKPYVWGS IYRFDGQASV FWAEHGPCYR CLYPEPPPPG MVPSCAEGGV 240
  241 LGVLCASIGS IQVNEAIKLL AGVGESLVGR LMVYDALEMS YRKIKVRKDP NCALCGENPT 300
  301 VTDLLADYED FCGAVSTEAQ EAVVDATVTA GELKAWQDAG KEIFLVDVRE PAEFEIVRIP 360
  361 GSTLIPKGDI VSGHALGKLP QDRQIVLHCK SGVRSAEALA ALKAAGFRDA VHLQGGVLSW 420
  421 IRQVDPSLPA Y

Type	Start	End	Confidence
Cytoplasmic	1	80	0.60
Transmembrane Helix	81	100	0.55
Non-Cytoplasmic	101	431	0.97