YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145593418, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNCTRYGPA AASRANTRFH AQFHANPGTK HLAGRRPGTP AATRLRFARS CGRPRPGLLR  60
   61 SAHRHCPDQP CRPVLPAPRA RTRYARSVAA TMTGEPGSRR TRPGLIHSLL DRFGHLVHEL 120
  121 SKFATVGGVA FIVDFALFNL LTSVQDMEQV TAKTISTVVA ATFAFLGNRF WTWRHRRGGN 180
  181 PAREYALFFI FNAVGLGITV AVLAISRYGL GQIWPEVFQT PLADNIASYL VGTGLATLFR 240
  241 FWSYRRFVFV PTGTPTAPEA KHDRYRA

Type	Start	End	Confidence
Cytoplasmic	1	121	0.97
Transmembrane Helix	122	142	0.89
Non-Cytoplasmic	143	149	0.88
Transmembrane Helix	150	172	0.89
Cytoplasmic	173	184	0.95
Transmembrane Helix	185	206	0.93
Non-Cytoplasmic	207	224	0.82
Transmembrane Helix	225	244	0.89
Cytoplasmic	245	267	0.98