YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113942909, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	217	0.96
Transmembrane Helix	218	237	0.89
Non-Cytoplasmic	238	241	0.59
Transmembrane Helix	242	262	0.83
Cytoplasmic	263	269	0.76
Transmembrane Helix	270	290	0.86
Non-Cytoplasmic	291	294	0.76
Transmembrane Helix	295	313	0.92
Cytoplasmic	314	322	0.86
Transmembrane Helix	323	345	0.91
Non-Cytoplasmic	346	352	0.76
Transmembrane Helix	353	372	0.94
Cytoplasmic	373	390	0.85
Transmembrane Helix	391	411	0.93
Non-Cytoplasmic	412	416	0.78
Transmembrane Helix	417	435	0.91
Cytoplasmic	436	461	0.81
Transmembrane Helix	462	482	0.80
Non-Cytoplasmic	483	484	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGDRPADP SVNQREHHSG RGHGCGCASG RRSRLPSRCV MSPVDPYGSA EAEPHGWERP  60
   61 SSAAPWPERE PEARSSGFAI SSDRPAESRG IPQAEPGAVT RDAGATVRRR ETPGYDHGGT 120
  121 GRHGWSSAEP MGGPGRLPSS GHHASADDRD YPTARQTPVR DASVRDDPVG SEHPTAQLQP 180
  181 VRADDDPAAP PPPRGRRRPG RRRATGAGAR QRSSGKAGRN LPAAIGVGVG LGALVLVPLF 240
  241 LYPLAFVAVV AGALAVGCWE MTRAVGRTGV HPPLVPLAVG SVLMSGLAWF AGPDALTLGL 300
  301 AVTVLGTLVW RLGDGLAGFR QDALATTLIA VYVPFLGGFA ALLAAPEDGA LRVLVTLAAV 360
  361 VLSDTGGYAA GANFGRHPMA PTISPKKSWE GLAGSLGAAA LGGALLIWLL FDVAPWWGAL 420
  421 FGVAVSAAAV LGDLAESMIK RDLGVKDMSS LLPGHGGLMD RLDSVLFALP TAYLLLALFV 480
  481 PVTG