YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113942561, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTRSPIRS TVGLKAVMAV TGLVLVLFLV AHMLGNLKIF TGAEDFNHYA HWLRDLGTPL  60
   61 LPYGWYLWLQ RGALLVALAA HIWAATMLAL RARSARPVRY AHRKKVQGSY AARTMRWGGV 120
  121 IIALFVIYHI LDLTTGHLNP VGDPTRPQAN VVADFAPERW YVTLFYTLAV VALGFHLRHG 180
  181 AYSAFRSLGQ QTPKGERRAQ GLALAFAVAL SVGYLVVPFA VLLGLVR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	34	0.90
Non-Cytoplasmic	35	68	0.95
Transmembrane Helix	69	92	0.88
Cytoplasmic	93	112	0.92
Transmembrane Helix	113	131	0.96
Non-Cytoplasmic	132	161	0.92
Transmembrane Helix	162	182	0.91
Cytoplasmic	183	200	0.96
Transmembrane Helix	201	223	0.93
Non-Cytoplasmic	224	227	0.77