YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159900275, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNSIWFVL VAVLFIGFFI LEGFDYGVGM LLPWLGRDDQ ERRVVINTIG PFWDGNEVWV  60
   61 LTAGGAIFAA FPEWYATLFS GFYLALFLML CALIVRAVAF EYRSKVADPR WRTTWDWVIF 120
  121 FGSAVPALLW GVALGNLLRG VPIDADKQFV GNFFDLLNPY ALLVGLTTLS MFLLHGALFL 180
  181 NLKTTDELRE RSLKLAQRIG PVATVLILAF IVATYSATDT FSRLGVNPGI IPVSALLTLL 240
  241 GAGWFVHTKQ TGWAFIMTCL TIGLSVITIF MALFPRVMIS SLDPNWSLTI YNASSSPYTL 300
  301 KIMSFVALIF VPIVLGYQAW TYWVFRQRVS TKSKLTY

Type	Start	End	Confidence
Cytoplasmic	1	5	0.51
Transmembrane Helix	6	28	0.88
Non-Cytoplasmic	29	77	0.56
Transmembrane Helix	78	100	0.89
Cytoplasmic	101	113	0.96
Transmembrane Helix	114	134	0.91
Non-Cytoplasmic	135	158	0.89
Transmembrane Helix	159	179	0.94
Cytoplasmic	180	198	0.82
Transmembrane Helix	199	217	0.95
Non-Cytoplasmic	218	225	0.79
Transmembrane Helix	226	246	0.92
Cytoplasmic	247	253	0.81
Transmembrane Helix	254	277	0.89
Non-Cytoplasmic	278	301	0.90
Transmembrane Helix	302	324	0.90
Cytoplasmic	325	337	0.97