YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159899650, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTINAART INGQRRRLGG FHWFLLLLTI GMTLLISAPT LFFQTVQYDA SATIQLDTQR  60
   61 YRSFMAEQTL QNQLCDASRN VVKSILPKFG SNTFGSACAA LAADGSLILT AQATSPENAQ 120
  121 AAADYTAQKL IQHIRAAGGR DSLRRLMEYE LGLLLKNQPA NDELGRRLRE LIGVQAFDFS 180
  181 LHASTDLPTI NAEDLNDLIR AFEVRFDQIA FELRQPDLPA ERARDLKTAR GLIGTILTDV 240
  241 LYSDPRYQSD DSQISAAYIK QAAILPTQAR SQNFALKFGL ALVVGIVGGI LLVLADRAIG 300
  301 IVDKVRELWE YRELIRNLVL RDLRSRYKNS ALGYVWSLLN PLLMISIFYL IFGLLLNSNI 360
  361 RHFHIFLMVA LLPWNYFIGG MAEGMMSVIS NANLVKKVYF PREILPITTL ISNLVNFMLA 420
  421 LPIMFLIMFI TGAPIKATLL LMPVIIVIES MFILGMILFL SSVIVFYRDV SHIMGIVLQL 480
  481 WFFITPVFYP LDNIASANYA KLVRWLNPMA SIVDFYRDIA YGGVTTIPDY PTPGLPSLDG 540
  541 VARTGLTALI VLCFGAYVFN HYSARFGEEL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	273	0.99
Transmembrane Helix	274	295	0.91
Cytoplasmic	296	331	0.93
Transmembrane Helix	332	353	0.93
Non-Cytoplasmic	354	362	0.76
Transmembrane Helix	363	389	0.69
Cytoplasmic	390	409	0.76
Transmembrane Helix	410	431	0.89
Non-Cytoplasmic	432	438	0.72
Transmembrane Helix	439	463	0.85
Cytoplasmic	464	469	0.69
Transmembrane Helix	470	490	0.82
Non-Cytoplasmic	491	540	0.91
Transmembrane Helix	541	561	0.91
Cytoplasmic	562	570	0.85