YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113899772, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLPLPVTV LSGFLGAGKT TLLNHILANR EGLRVAVIVN DMSEVNIDAR LVGQGELALN  60
   61 RVEEQLIELS NGCICCTLRE DLLLEVSKLA RAGRFDYLLI ESTGISEPLP VAETFTFEDE 120
  121 SGLSLGEIAK LDTMVTVVDA LNFLHDFNAA HDLRDRDLAI DEADERTLVD LLIDQIEFCN 180
  181 VLIINKTDLV SAEQLIHLHE LLNKLNPQAK IFHAQHGQVP LNEILNTGLF DFDQASAAPG 240
  241 WLAELRGEHT PETEEYGIRS WVYRARRPFV AQRFWDFVNN DWPGVIRAKG FFWVISQPET 300
  301 AGLLSQAGQN CRVEPAGQWW ADSDQSEWPE TAEERTEIEA LWDEQVGDRR QELVFIGQDF 360
  361 DQQWLQQTLD ACLVSDHEWQ QPAATWQIDD PFADWNEYEA IA

Type	Start	End	Confidence
Signal Peptide	1	18	0.87
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	402	0.99