YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113731539, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSNDFDPG QPVDRPVGQT EGASRRVIVT SGLGLALMAA IPSFAPSSSS AAAAPAPIKV  60
   61 SGDKTMSSGF ITTKDGTQIY YKDWGPKTAQ PIVFHHGWPL SADDWDNQMM FFLGQGFRVV 120
  121 AHDRRGHGRS SQTDEGNEMD TYAADVIALA DHLDLKNAVH VGHSTGGGEV IHYVARAKPG 180
  181 RVAKAVLIGA VPPIMVKSDK NPGGLPIEVF DGFRAAQVAN RAQFFHDVAA GPFYGFNRPG 240
  241 AKVSQATVEN WWRQGMMGGT KAHYDCIKAF SETDFTEDLK KVDVPVLLMH GEDDQIVPIA 300
  301 DSAMIGIKLL KKGTLKTYPG LPHGMCTTHP EIVNPDLLAF IKA

Type	Start	End	Confidence
Cytoplasmic	1	26	0.59
Transmembrane Helix	27	45	0.58
Non-Cytoplasmic	46	343	0.96