YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167350339, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTRKSPPG PLEYLRRWQM QAWLAAVGIF LYAPLIALMA FSFNDSRRNI VWKGFTLKYY  60
   61 DKAFHDSSLI EAFANSLTIA ALCTVLSVIL GAMVALVLWR FRFPGKTVLD GALALPIVVP 120
  121 EICMGVAMLV FFAKVLPWPV GLPWPLNLGA ITIAHVSFSF PFVAVVVRAR MASFNREMEE 180
  181 AARDLGAGEW RTIWDVILPH MAPSLVAGAL LAFTLSLDDF VITFFTAGPD TVTFPVKVYS 240
  241 MVRFSVTPEV NAASTILIVL TVILTAVALK LQGDPAGVAG GHGGEKA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.95
Non-Cytoplasmic	43	76	0.96
Transmembrane Helix	77	99	0.95
Cytoplasmic	100	110	0.84
Transmembrane Helix	111	133	0.91
Non-Cytoplasmic	134	147	0.84
Transmembrane Helix	148	169	0.89
Cytoplasmic	170	192	0.91
Transmembrane Helix	193	215	0.85
Non-Cytoplasmic	216	249	0.64
Transmembrane Helix	250	271	0.86
Cytoplasmic	272	287	0.63