YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167645301, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.50
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	339	0.97
Transmembrane Helix	340	359	0.92
Cytoplasmic	360	365	0.79
Transmembrane Helix	366	387	0.90
Non-Cytoplasmic	388	392	0.72
Transmembrane Helix	393	413	0.87
Cytoplasmic	414	437	0.87
Transmembrane Helix	438	459	0.93
Non-Cytoplasmic	460	471	0.78
Transmembrane Helix	472	495	0.88
Cytoplasmic	496	539	0.94
Transmembrane Helix	540	561	0.89
Non-Cytoplasmic	562	870	0.94
Transmembrane Helix	871	890	0.93
Cytoplasmic	891	896	0.75
Transmembrane Helix	897	916	0.94
Non-Cytoplasmic	917	922	0.76
Transmembrane Helix	923	944	0.83
Cytoplasmic	945	971	0.86
Transmembrane Helix	972	989	0.94
Non-Cytoplasmic	990	1003	0.69
Transmembrane Helix	1004	1026	0.94
Cytoplasmic	1027	1047	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFFIDRPI FAWVIAIVIM LAGALAIRTL PVAQYPAIAP PQVAVSAMYP GASAKTLEDS  60
   61 VTQVIEQKMK GIDGLDYMSS TSDSTGAATV TLTFKAGTDI DIAQVQVQNK LQTATALLPQ 120
  121 EVQQQGLTVA KSARNFLLVI GLYSDNPKTT SNDLTDYIAS NIQDPLSRVD GVGDVQLFGA 180
  181 QYAMRIWLDP NKLASYSLTP SDVSAAIRAQ NAQVSAGQLG GTPNLPGTAL NATITAQSRL 240
  241 QTPEEFENII LKNSQGGAIV YMRDVARVEM GAESYSAAAK YNGKPSGGLA IKLAPGANAL 300
  301 DTAKAVKAQV DELAKNFPSE YKYIVPYDST PFVEQSIHEV VKTLMEAIVL VFIVMFLFLQ 360
  361 NWRATLIPTI AVPVVLLGTF GVLAMFGYSI NTLTMFGLVL AIGLLVDDAI VVVENVERVM 420
  421 SEEGLSPKEA TRKSMNEITG ALIGIALVLS AVFVPMAFFG GSQGVIYRQF SITIVSAMML 480
  481 SVVVALVLTP ALCATMLKPI AKGHMVAETG FFGWFNRSFN DVSGRYQNSV RGILGKSVRW 540
  541 MAIYAAIIVA MGLLFVRLPS AFLPEEDQGF MLTLVQLPPG ATEERTLGVL DQVRSHFMEN 600
  601 EKEAVQSVFT VNGFSFSGPG QNAGLAFIRL KNFDERKSAD LKVPALAGRA MGKFAQIRDA 660
  661 MVFAIVPPAV TELGNSSGFD FQLKDIGGLG HEALVAARNQ MLGMAAQDPA LVGVRPNGQD 720
  721 DTPQLKIDID QAKAGAMGLT TADINAALST AWGGSYVNDF VDRGRVKKVY VQADAPFRMT 780
  781 PEDLNKWYVR NSSGQMVPFS AFATSNWIYG SPRLERYNGL PSMNIQGSPA PGASSGDAIK 840
  841 AMEAIASKLP AGIGYEWTGL SAQELEAGNQ APALYALSIL VVFLLLAALY ESWTIPLSVI 900
  901 MVIPLGIVGA LLATTLRGLS NDIYFQVGLL TTMGLAAKNA ILIVEFAKEI YLRTGNLVEA 960
  961 TLDAVRIRLR PIIMTSLAFI FGVLPLAISN GAGSGSQHAI GTGVIGGMLS GTILAIFFVP1020
 1021 LFFVLVERIF KAKLRKDEAS AAPVEGH