YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150027463, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPRHEKSA GNQEVAAEHA QAAGSQDTGS HDKARGPRLR EIPLRLMVPN MITVLAICAG  60
   61 LSGIRLAFEN RFELAVAMVL LAAFLDGIDG RIARLLKATS SFGVQMDSLA DIINFGVAPA 120
  121 LVLYVFLLDQ ARSVGWIAAL IYAIAAGLRL ARFNVMAERQ VKARWQSEYF VGVPAPAGAM 180
  181 LVLLPVYLGL LGLAPDRTFA LIASVYTVLI AFLMVSRLPV WSGKSENRVR RDLVLPVILV 240
  241 VVLYVATLMT YTWETMAVTA VAYLVTLPFG ARSWQRKYGD WPSAHGNDGL PGDSE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	67	0.91
Non-Cytoplasmic	68	73	0.78
Transmembrane Helix	74	93	0.90
Cytoplasmic	94	107	0.87
Transmembrane Helix	108	128	0.91
Non-Cytoplasmic	129	133	0.88
Transmembrane Helix	134	153	0.93
Cytoplasmic	154	168	0.93
Transmembrane Helix	169	191	0.92
Non-Cytoplasmic	192	198	0.83
Transmembrane Helix	199	221	0.91
Cytoplasmic	222	232	0.86
Transmembrane Helix	233	251	0.91
Non-Cytoplasmic	252	255	0.67
Transmembrane Helix	256	274	0.73
Cytoplasmic	275	295	0.75