YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150027265, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGHMPAFR RLFGRVAGVV LVLAALAVLV ALGTWQMQRL QWKEALIGAI AERRSAPAVP  60
   61 LEQIEAMAAA GGDIDYRTVH ASGIYDHGRE RHFFATHEGR TGFYVFTPLM LADARALFVN 120
  121 RGFVPFEKKD SSKRSEGLVA GKVTVNGLAR PKLSGKPSSL VPDNDPAKNI FYWKDLGAMA 180
  181 NSTGISSDRV VPFFIDADAA PNPGGLPVGG VTQFDLPNNH LQYALTWYGL AAALVAVSGV 240
  241 FVYRRRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.80
Transmembrane Helix	12	34	0.78
Non-Cytoplasmic	35	222	0.95
Transmembrane Helix	223	243	0.95
Cytoplasmic	244	247	0.88