YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150031547, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	47	0.92
Non-Cytoplasmic	48	183	0.97
Transmembrane Helix	184	205	0.95
Cytoplasmic	206	215	0.90
Transmembrane Helix	216	239	0.90
Non-Cytoplasmic	240	257	0.83
Transmembrane Helix	258	280	0.85
Cytoplasmic	281	301	0.90
Transmembrane Helix	302	326	0.82
Non-Cytoplasmic	327	357	0.88
Transmembrane Helix	358	376	0.94
Cytoplasmic	377	405	0.91
Transmembrane Helix	406	430	0.90
Non-Cytoplasmic	431	461	0.94
Transmembrane Helix	462	483	0.92
Cytoplasmic	484	494	0.93
Transmembrane Helix	495	518	0.91
Non-Cytoplasmic	519	525	0.91
Transmembrane Helix	526	547	0.91
Cytoplasmic	548	580	0.89
Transmembrane Helix	581	602	0.75
Non-Cytoplasmic	603	631	0.82
Transmembrane Helix	632	654	0.81
Cytoplasmic	655	677	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAVDFLPP GRALRQQISD DDRLKRAVMF VVGIYLVIAL AIPLFVMLSK SLSTYTFDLH  60
   61 QFEFQVSDES GGGWSDPVTA AALNTAIAAF PESDLEAGAD GRLQAAKLFA DFSFRSPVRY 120
  121 RIRGTSEEAH FLAGSQLVRG TEWKEYDSNH FRRVMLRPSR SVGLSNFTEY FSTPSLVRSI 180
  181 KNSVMIALIS TAVTLTVAFG LAYALNRSRM RGKGAFKLIV TIPILVPSLL PGIALVYLFG 240
  241 NQGVFKDLLL GHSIYGPLGI VVGSVFFTLP HAFLIISTAL SVADARHYEA ATSLRASRWR 300
  301 TFWTVTVPGA RYGLISAAFV VFTLVITDFG LPKVIGGQYG MLAVDIYKQV IGQQNFEMGA 360
  361 VVSVILLIPA FLAFAVDRMT QRRQVALLSA RAVPFEPKPR RGFDAACFAF CSLVAIFVLG 420
  421 MIGMCQVAAL VKFWPYDLSL SLRNYAFDLM DGGGWDAYYN SIRLALMTAV IGSLIVFTGA 480
  481 YMVEKTKGFG LGRGAFHMLA MLPMAVPGMV LGLAYIFFFN NPGNPLHGIY GTMAILVLCT 540
  541 VTHFYTVAHL TALTALKQLD PEFEAVADSL KIPFYKLFFR VTLPVCLPAL LEIAIYLFVN 600
  601 AMTTVSAVVF LYATDTKLAS VAILNMDDAG DIAPAAAMGM MIFYTNVAAK LLHAVVARLL 660
  661 LARTQGWRQV AQTAVPA