YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113873568, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESSLDGNP VIPRGSDDEC HKKPAALAAS SNLQADSHHD HVDYAPHHRR CTLFRHGPRG  60
   61 MVADRCSFGH CLLRLGELVF RNAHRQGGSL RLHLGADASS AGRYPPPRMG SRLWLRKALR 120
  121 DPGGEGDDRR IGGADARHLD RRLSRSLRDF DMSMRTPLGK VRGLGSAKEG TDHFWRQRVT 180
  181 AVASIPLTIF FVVFLAHYAG APHAELLAAL ANPFVAVTMG LMVVAGLVHM KIGMQVIIED 240
  241 YVHGEGAKIA LLMLNTFFTI AVGGLCLFAV LKIAFAG

Type	Start	End	Confidence
Cytoplasmic	1	178	0.96
Transmembrane Helix	179	201	0.89
Non-Cytoplasmic	202	207	0.84
Transmembrane Helix	208	230	0.91
Cytoplasmic	231	250	0.88
Transmembrane Helix	251	275	0.88
Non-Cytoplasmic	276	277	0.86