YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113871182, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAAIFVVF PFCLAFAAFS DLFTMTIPNR ISAIVLVSFV VISPLAGLDA SKACLHVAAA  60
   61 VLVFGACFCL FAVNVMGGGD AKLLTASAIW FGFEASLIDF LLYVSAFGGL LTIAVLLLRS 120
  121 QENLILAARI PVPRLLLTAK KIPYGIAIAL GGFAAYPSSP LMKLALTQFS

Type	Start	End	Confidence
Cytoplasmic	1	4	0.75
Transmembrane Helix	5	24	0.83
Non-Cytoplasmic	25	30	0.67
Transmembrane Helix	31	48	0.92
Cytoplasmic	49	54	0.76
Transmembrane Helix	55	78	0.87
Non-Cytoplasmic	79	96	0.88
Transmembrane Helix	97	118	0.92
Cytoplasmic	119	138	0.88
Transmembrane Helix	139	159	0.84
Non-Cytoplasmic	160	170	0.81