YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94426200, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	251	0.99
Transmembrane Helix	252	273	0.93
Cytoplasmic	274	280	0.66
Transmembrane Helix	281	301	0.84
Non-Cytoplasmic	302	306	0.76
Transmembrane Helix	307	327	0.92
Cytoplasmic	328	339	0.72
Transmembrane Helix	340	357	0.85
Non-Cytoplasmic	358	390	0.83
Transmembrane Helix	391	413	0.90
Cytoplasmic	414	433	0.90
Transmembrane Helix	434	456	0.92
Non-Cytoplasmic	457	470	0.79
Transmembrane Helix	471	493	0.84
Cytoplasmic	494	504	0.66
Transmembrane Helix	505	524	0.92
Non-Cytoplasmic	525	541	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIIACLGF WCALCLAQLT QANEATSVQA LLKTLPEASY QEKENQINQI ASLNDERVLP  60
   61 ILQNLLEGEL YYLRDSKAIV YSEKLSGRTY KATDAFTNET LGEFKRRDVR KIKINNNLRR 120
  121 VLNGHIAELQ ITSKNPDTRL SAANEMLKTG ELENLSLIQK ALETEKNINV LDALQTAQAI 180
  181 ILLNSSDQAQ RLTALKTLDR SLYPESRIAL TQFLNRIEAN PKQYTEAEKA MALKNLDSID 240
  241 QLMELNSIAE NIYFGLALGA VLLLAAIGLA ITFGVMGVIN MAHGEMIMLG AYTTFVIQQL 300
  301 MPNNIGMSLV VAIPAAFLVS GLVGVIIERT VIRHLYGRPL ETLLATFGIS LVLQQAVRSI 360
  361 FGPLNQDVIT PDWLAGTFMV NPGLELTYNR LYIIIFSLMV LAGLALVLKK TLFGLQMRAV 420
  421 TMDRPMASSM GIKTGWVDAL TFGLGSGIAG IAGVALSQLT NVGPNLGQAY IIDSFMVVVF 480
  481 GGVGNLWGTL VGAMSLGVAN KMFEPLAGAV LAKIIVLVAI ILFIQKRPRG LFALKGRAVE 540
  541 G