YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159121111, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNPNEKNPF IQTFIEEELT VSETKPNHLG DQDEKERLAY RRRGIYLLPN LFTIAGLFAG  60
   61 FYAIITAMEG YFNDAAIAIF VAMIMDFFDG RVARLTHTQS AFGAELDSLS DMVSFGIAPA 120
  121 LVIYSWSLEG LGKLGWLAAF VFAASGALRL ARFNTQVLLS DKRYFKGLPI PAAAGVLASM 180
  181 VWLCVDSEIL GDTMSLITAV IAVIIAALMV SNIRYYSFKE IDLKGRVPFV AILLVVVAFV 240
  241 SISLDPPKIL FLVFFCYALS GPLLSLYHLY KKRALRKKNH

Type	Start	End	Confidence
Cytoplasmic	1	44	0.99
Transmembrane Helix	45	65	0.96
Non-Cytoplasmic	66	74	0.67
Transmembrane Helix	75	93	0.88
Cytoplasmic	94	107	0.82
Transmembrane Helix	108	127	0.89
Non-Cytoplasmic	128	133	0.80
Transmembrane Helix	134	153	0.94
Cytoplasmic	154	163	0.95
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	193	0.81
Transmembrane Helix	194	216	0.89
Cytoplasmic	217	224	0.86
Transmembrane Helix	225	244	0.92
Non-Cytoplasmic	245	248	0.92
Transmembrane Helix	249	270	0.94
Cytoplasmic	271	280	0.98