YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152988771, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	44	0.91
Non-Cytoplasmic	45	64	0.85
Transmembrane Helix	65	84	0.93
Cytoplasmic	85	93	0.87
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	119	0.75
Transmembrane Helix	120	140	0.90
Cytoplasmic	141	157	0.90
Transmembrane Helix	158	182	0.85
Non-Cytoplasmic	183	188	0.82
Transmembrane Helix	189	208	0.95
Cytoplasmic	209	253	0.97
Transmembrane Helix	254	273	0.92
Non-Cytoplasmic	274	293	0.93
Transmembrane Helix	294	313	0.92
Cytoplasmic	314	321	0.86
Transmembrane Helix	322	341	0.95
Non-Cytoplasmic	342	350	0.76
Transmembrane Helix	351	370	0.95
Cytoplasmic	371	382	0.76
Transmembrane Helix	383	404	0.90
Non-Cytoplasmic	405	414	0.80
Transmembrane Helix	415	435	0.92
Cytoplasmic	436	448	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIFRPAPH QAPLPDAEVD STYRRLRWQI FAGIFIGYAG YYLLRKNFSL AMPYLIEDGY  60
   61 SRGQLGVAMS AIAIAYGLSK FIMGLVSDRS NPRVFLPFGL LVSAAVMFIF GFAHWATSSV 120
  121 AIMFVLLFIN GWAQGMGWPP SGRTMVHWWS QKERGGVVSV WNVAHNVGGR LIGPLFLLGL 180
  181 ALFGDWRSAF YVPAIVAVGV AVFAYFAMRD TPQSCGLPPI ERHKDDYPEG YDEHHERELS 240
  241 TKEIFVTYVL RNKLLWYIAL ANVFVYLLRY GVLDWAPTYL KEAKHFNVDK SSWAYFFYEW 300
  301 AGIPGTLLCG WLSDKLFKGN RGATGVVFMI LVTIGTLIYW LNPAGNPAID MAALIMIGFL 360
  361 IYGPVMLIGL QALELAPKKA AGTAAGFTGL FGYLGGSVAA NALVGYTVDH FGWDGGFKLL 420
  421 IGACLLAILF LCLTLRKPAV QALPQQDG