YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150959430, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAPTMTTA NSETPAGNPK RKRWLLILLA VIILGTLASV AWEFFYGRWH EDTDDAYING  60
   61 NVVQITPQIV GTVVSIGADD GDLVRKGQEL VRFDPSDADI ALQRAEANLA HTVRQVRGLF 120
  121 SNVDGYRAEV ATRKVALAKA EADYRRRKNL ADDGAISQEE LAHARDALDS AKASLTSSEQ 180
  181 QLNTNRALVD DTQITSHPDV KAAAAQLRQA YLDDARSTIV APVTGYVAKR SVQVGQRVQP 240
  241 GNALMAVVPL EQIWIDANFK ETQLKHMRIG QPVEIRSDLY GSDVRYSGTV DSLGVGTGSA 300
  301 FSLLPAQNAT GNWIKIVQRV PVRIHIDPEE LQKHPLRIGL SMDVKVDLHD QSGPALAQQP 360
  361 PREALFSTDV YQQQLASADK LIERLIEANL AEDHGKTAQR

Type	Start	End	Confidence
Cytoplasmic	1	23	0.69
Transmembrane Helix	24	42	0.68
Non-Cytoplasmic	43	400	0.96