YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_PSEA7
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIQRSILIV ALAVVSYLLV LQWNKDYGQP ELPAASASMN TTQGLPDTPS AAGTSSDVPT  60
   61 AQSGAAGSEA ADKPVAVSDK LIQVKTDVLD LAIDPRGGDI VQLGLLQYPR RLDRPDVPFP 120
  121 LFDNGRERTY LAQSGLTGAD GPDASSAGRP LFHSAQGSYQ LADGQNELVV DLSFSRDGVN 180
  181 YIKRFTFHRG LKADCSDKEK AQKKIECINE NAYQVGVSYL IDNQSGKTWS GNLFAQLKRD 240
  241 GSADPSSTTA TGVSTYLGAA VWTPDSPYKK ISTKDMDKEQ FKESVQGGWV AWLQHYFVTA 300
  301 WVPTKGEQHQ VMTRKDGQGN YIVGFTGPTL SVPAGGKVET DLTLYAGPKL QKHLKELSPG 360
  361 LELTVDYGFL WFIAQPIFWL LQHIHSLIGN WGWSIIALTV LIKLAFFPLS AASYRSMARM 420
  421 RAVSPKMQAI KEQHGDDRQK MSQAMMELYK KEKINPLGGC LPILVQMPVF LSLYWVLLES 480
  481 VEMRQAPWLG WITDLSVKDP FFILPIVMGG TMLIQQMLNP TPPDPMQAKV MKLMPIIFTF 540
  541 FFLWFPAGLV LYWVVNNVLS IAQQWYITRK IEAAAKTA

Type	Start	End	Confidence
Signal Peptide	1	22	0.47
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	390	0.61
Transmembrane Helix	391	412	0.89
Cytoplasmic	413	453	0.95
Transmembrane Helix	454	478	0.87
Non-Cytoplasmic	479	498	0.88
Transmembrane Helix	499	518	0.88
Cytoplasmic	519	532	0.87
Transmembrane Helix	533	555	0.90
Non-Cytoplasmic	556	578	0.93