YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PROB_PSEA7
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDKVTGARR WVVKIGSALL TADGRGLDRN AMAVWVEQMV ALHCAGIELV LVSSGAVAAG  60
   61 MSRLGWVSRP SAMHELQAAA SVGQMGLVQA WESSFALHGL QTAQVLLTHD DLSDRKRYLN 120
  121 ARSTLRTLVE LGVVPVINEN DTVVTDEIRF GDNDTLAALV ANLVEADLLV ILTDRDGMFD 180
  181 ADPRNNPDAQ LIYEARADDP QLDAVAGGSA GALGRGGMQT KLRAARLAAR SGGHTVIVGG 240
  241 RIERVLDRLR AGERLGTLLT PDRSRKAARK QWLAGHLQMR GTLVLDDGAV KAVSQDHKSL 300
  301 LPVGVKAVQG SFRRGEMVVC VDQSGREVAR GLVNYSALEA QKILGQPTDA IEALLGYVDG 360
  361 PELVHRDNLV LV

Type	Start	End	Confidence
Cytoplasmic	1	38	0.45
Transmembrane Helix	39	61	0.66
Non-Cytoplasmic	62	372	0.75