YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94415912, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.44
Transmembrane Helix	26	45	0.61
Non-Cytoplasmic	46	76	0.84
Transmembrane Helix	77	98	0.92
Cytoplasmic	99	105	0.88
Transmembrane Helix	106	126	0.91
Non-Cytoplasmic	127	132	0.77
Transmembrane Helix	133	152	0.93
Cytoplasmic	153	162	0.87
Transmembrane Helix	163	185	0.93
Non-Cytoplasmic	186	202	0.86
Transmembrane Helix	203	222	0.89
Cytoplasmic	223	239	0.63
Transmembrane Helix	240	261	0.70
Non-Cytoplasmic	262	268	0.83
Transmembrane Helix	269	291	0.92
Cytoplasmic	292	297	0.86
Transmembrane Helix	298	316	0.94
Non-Cytoplasmic	317	323	0.76
Transmembrane Helix	324	346	0.85
Cytoplasmic	347	363	0.90
Transmembrane Helix	364	385	0.91
Non-Cytoplasmic	386	408	0.84
Transmembrane Helix	409	429	0.89
Cytoplasmic	430	459	0.90
Transmembrane Helix	460	481	0.91
Non-Cytoplasmic	482	499	0.87
Transmembrane Helix	500	523	0.90
Cytoplasmic	524	568	0.98
Transmembrane Helix	569	591	0.90
Non-Cytoplasmic	592	599	0.80
Transmembrane Helix	600	621	0.89
Cytoplasmic	622	625	0.90
Transmembrane Helix	626	647	0.91
Non-Cytoplasmic	648	652	0.79
Transmembrane Helix	653	674	0.91
Cytoplasmic	675	689	0.83
Transmembrane Helix	690	709	0.95
Non-Cytoplasmic	710	748	0.94
Transmembrane Helix	749	769	0.93
Cytoplasmic	770	789	0.88
Transmembrane Helix	790	809	0.94
Non-Cytoplasmic	810	816	0.75
Transmembrane Helix	817	836	0.94
Cytoplasmic	837	848	0.79
Transmembrane Helix	849	872	0.89
Non-Cytoplasmic	873	894	0.89
Transmembrane Helix	895	918	0.85
Cytoplasmic	919	933	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILALIIALP FLGALLPLLA ERGGRTLCAA AAGVAPLLGL ALLLGQRGTV FAGQALTASY  60
   61 AWLPDIGINL SLRLDGLGFL FALLILGIGL LVILYARYYL SEQEPMGRFF AFLLLFMGSM 120
  121 LGVVLAENLL LMMLFWELTS LSSFLLIGFW GSRSDARKGA RMALTVTGGG GLALLAGILL 180
  181 LGHIAGSFEL TQVLAAGEAV RTHALYPLVL VLILLGVFTK SAQFPFHFWL PHAMAAPTPV 240
  241 SAYLHSATMV KAGVFLLARL YPALAGTEWF FYLVSLSGLV TLLLGAGMAL FQHDLKGLLA 300
  301 YSTISHLGLI TLLFGLDSPL SNVAAVFHII NHATFKASLF MAAGIIDHET GSRDMRLING 360
  361 MWRYLPHTAV LAIVASLAMA GVPLLNGFLS KEMFFGETLS QNLLGSFNWM VPAMATLAGV 420
  421 FSVAYSLRFV HDVFFNGEPA RLPKFPPHEP PRYMKVPVEI LVFLCLLVGM LPAYTVAPLL 480
  481 ATAARASLGG HLPEYSLAIW HGFNLPLLMS VVALVGGVLV YVLRKPLFNW YAGLPEIDAK 540
  541 LVFEQQVQRV VMLAERFTAW LENGSLQRYL AWLLGVAVLV VVVELVPLTS LTGSRGLTPL 600
  601 DGITALGMLV LAFSGLATAL FHRMRLVALL VLSVAGLLVA LAFARFAAPD LALTQLSVEV 660
  661 VTMVLLMLAL YFLPSRTPAE SSSLRGLRDV VLAGGVGTMV ALLAYAVLTR PYESIAGFFV 720
  721 ENSVSGGGGY NVVNVILVDF RGFDTLGEIS VLAIAAVGIH AMLAGFALHK PTCDPQGRNW 780
  781 AHAKHPLILE TLSRVLLPLA LLISVFIFLR GHNLPGGGFI AGLVTAIALV LQYIASGSQW 840
  841 VEQRLPLNYA AMAGAGVLIA GLTGLGSWLF GYPFLTSAFG HFELPLIGEI ELATAMLFDL 900
  901 GVYLTVVGAA LLILSYLGKL SLMPEPVAKE EAL