YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152988364, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEKPEQPE HDQEMPLVSH LTELRTRLLR SVAAIFLIFA GLFYFSQKIY TLVSEPLRRF  60
   61 LPEGTSMIAT DVASPFLAPF KLTMVVALFL AMPVILAQVW GFIAPGLYKH EKRVALPLLV 120
  121 SSIILFYAGM AFAYFLVFPM IFHFFASVTP EGVAMMTDIN SYLDFVLTLF FAFGVAFEIP 180
  181 VATVLLIWIG VVDVEYLKKI RPYVIIGCFV VGMVLTPPDI FSQTMLAVPM WLLFEIGLLF 240
  241 GRLVRKRGEH PDDQPASDGD QPPATRQ

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	47	0.91
Non-Cytoplasmic	48	81	0.92
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	117	0.81
Transmembrane Helix	118	142	0.82
Non-Cytoplasmic	143	166	0.88
Transmembrane Helix	167	191	0.90
Cytoplasmic	192	199	0.90
Transmembrane Helix	200	218	0.91
Non-Cytoplasmic	219	224	0.65
Transmembrane Helix	225	244	0.83
Cytoplasmic	245	267	0.91