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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB8C_ARATH, MRP6...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLLLLCSW MNLRSSSAAA QDCSVTGLSD PLLTKNPRKE SARLATAGFF SILSFSWMNP  60
   61 LLSLGFKKPL SPEDIPSVVP EDEAQLAYKK FSQAWDTLLG DESSTKERNL VFRAVVKVYF 120
  121 KENIFIAVFA FLRTFAVVSL PLMLYVFVDY ANSDHRDLRN GFFNLACLVM LKLVESLTMR 180
  181 HWYFASRRSG MRIRSALMVA AYKKQLKLSS LGRKRHSSGE IVNYIAVDAY RMGEFLWWFH 240
  241 SGWSLSLQLL LSTAVLFGVV GAGAFPGLIL LLLCGLLNLP FAKMLQNCQT QFMIAQDKRL 300
  301 RSTSEILNSM KVIKLQSWED EFKKKIESCR DDEFTWLAKA QLTKAFGSFL YWMSPTIVSS 360
  361 VVFLGCALLK SAPLNASTIF TVLATLRVMS EPVKIIPDAI SAIIQGNVSF QRLNNFLLDD 420
  421 ELKMDEIERS GLDASGTAVD IQVGNFGWEP ETKIPTLRNI HLEIKHGQKV AVCGPVGAGK 480
  481 SSLLHAVLGE IPKVSGTVKV FGSIAYVSQT SWIQSGTIRD NILYGKPMES RRYNAAIKAC 540
  541 ALDKDMNGFG HGDLTEIGQR GINLSGGQKQ RIQLARAVYA DADVYLLDDP FSAVDAHTAG 600
  601 VLFHKCVEDS LKEKTVILVT HQVMEEGTIT QSGKYEELLM MGTAFQQLVN AHNDAVTVLP 660
  661 LASNESLGDL RKEGKDREIR NMTVVEKIEE EIEKTDIPGV QLTQEEEKES GYVGMKPFLD 720
  721 YIGVSRGWCL LWSSVLGQVG FVVFQAASTY WLAFAIGIPK ITNTMLIGVY SIISTLSAGF 780
  781 VYARAITTAH LGLKASKAFF SGFTNAVFKA PMLFFDSTPV GRILTRASSD LNVLDYDVPF 840
  841 AFIFVVAPAV ELTAALLIMT YVTWQVIIIA LLALAATKVV QDYYLASARE LIRINGTTKA 900
  901 PVMNYAAETS LGVVTIRAFG TAERFFKNYL NLVDADAVLF FLSNAAMEWV ILRIETLQNV 960
  961 TLFTCALLLI LIPKGYIAPG LVGLSLSYAL TLTQTQVFLT RWYCTLSNSI ISVERIKQYM1020
 1021 NIPEEPPAII DDKRPPSSWP SNGTIHLQEL KIRYRPNAPL VLKGISCTFR EGTRVGVVGR1080
 1081 TGSGKSTLIS ALFRLVEPAS GCILIDGIDI SKIGLKDLRM KLSIIPQEPT LFRGCIRTNL1140
 1141 DPLGVYSDDE IWKALEKCQL KTTISNLPNK LDSSEVSDEG ENWSVGQRQL FCLGRVLLKR1200
 1201 NKILVLDEAT ASIDSATDAI IQRIIREEFA DCTVITVAHR VPTVIDSDMV MVLSFGDLVE1260
 1261 YNEPSKLMET DSYFSKLVAE YWASCRGNSS QNLQL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle