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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MKS3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMRTRPLAA MAVRSCFSAL TGTVYLLLVL CEVSWAQIFS FPFQRPETCD LNQYFDISAL  60
   61 SCAPCGANQR RDALGTSCIC LPGYHMISNN GGPSIICKKC PENMKGVTKD GWDCISCPNG 120
  121 LTAEGKCHCP SGHILVERNV SGSLLSQATC ELCDGNENSF TKPNALGTRC VRCEPTFVNT 180
  181 SRSCSCSEPH ISTGGLCFSN TGNFPQRLIS TERYGELGMS SNSEWFTKYL QATAAACWTH 240
  241 SNLTSCQALG NMCVMNMNSY DSTTFDACRL FHYVFEGAAG LTGVHSVPFW RQNLPWLFYG 300
  301 DQPGLASQVL STTPLPTNFS FKGQNQLKFV AASYDIRGNF IRWQTVKGGV LQLCPDTERR 360
  361 LDAAYSFGTT YQQNCEISLS KLLADFPSPV FYDIYLEYTD EVQHHYLWAI PVLNLNLQHN 420
  421 KLFVNQDSSS SKWLLTRRIF LVDAVSGREN DLGNQPRVIR VATQISLSIR LVPNTKNGNI 480
  481 YTPLLTIAYS DIDIKNAYSQ SVKISFSVKY EMNQGDAFVQ TDIALGVLGG LAVLSSLLKT 540
  541 AGWKRRIGSP MIDLQTVMKF LLYYAGDLAN VFFIITVGTG LYWLIFFKAQ KSVSVLLPMP 600
  601 VQEERFVTYV GCAFAMKALQ FLHKLISQIT IDIFFIDWER PKGKVLKAVE GEGGVRSATV 660
  661 PVSIWRTYFV ANEWNEIQTV RKINPLFQVL TTLFFLEVVG FKNLALMDPS SSLSRSLSDY 720
  721 AAPYSRILRY AVATTIWLVI GIVQVVFFAA FYERFIEDKI RQFVDLCSMS NVSVFLLSHR 780
  781 CFGYYIHGRS VHGHADTNME DMNMNLRREA ENLCSQRGLV PNTDGQTFQI AVSSQMRQHY 840
  841 DRIHETLTRR NGPARLLSSS GSTLEQSIKA YHAMNKFLGS FIDHVHKEMD YFIKDKLLLE 900
  901 KILGMEFMEP LEKSIFYNDE SHSFSSVLYY GNEATLLIFD LLFFCVVDLA CQNFVLASFL 960
  961 TYLQQEIFRF IRNTVGQKNL ATKTLVDERF LI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle