YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAE2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLGRARTG RQNRSMSFEG LDFADPKKNN NYMGKIVLVM TLTAMCILLL NQSPTFNTPS  60
   61 VFSRSEPGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD NLSRGNLGAV KILQQLFPEP 120
  121 GKLQFIYADL GDANAVNKIF SENAFDAVMH FAAVAYVGES TQFPLKYYHN ITSNTLVVLE 180
  181 TMAAHGVKTL IYSSTCATYG EPEKMPITEE TPQVPINPYG KAKKMAEDII LDFSKNSIMA 240
  241 VMILRYFNVI GSDPEGRLGE APRPELSEHG RISGACFDAA RGIIPGLQIK GTDYKTVDGT 300
  301 CVRDYIDVTD LVDAHVKALE KAKPRKVGIF NVGTGKGSSV KEFVEACKKA TGVDIKVDYL 360
  361 ERRAGDYAEV YSDPRKIKEE LNWTAKHTNL QESLKMAWRW QKLHRSGYGS SSLVSAY

Type	Start	End	Confidence
Cytoplasmic	1	31	0.85
Transmembrane Helix	32	53	0.75
Non-Cytoplasmic	54	417	0.80