YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56181507
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSFNTLRFY LWETIVFFSL AASKEADAAR SAPKPMSPSD FLDKLMGRTS GYDARIRPNF  60
   61 KGPPVNVSCN IFINSFGSIA ETTMDYRVNI FLRQQWNDPR LAYNEYPDDS LDLDPSMLDS 120
  121 IWKPDLFFAN EKGAHFHEIT TDNKLLRISR NGNVLYSIRI TLTLACPMDL KNFPMDVQTC 180
  181 IMQLESFGYT MNDLIFEWQE QGAVQVADGL TLPQFILKEE KDLRYCTKHY NTGKFTCIEA 240
  241 RFHLERQMGY YLIQMYIPSL LIVILSWISF WINMDAAPAR VGLGITTVLT MTTQSSGSRA 300
  301 SLPKVSYVKA IDIWMAVCLL FVFSALLEYA AVNFVSRQHK ELLRFRRKRR HHKGANNNNT 360
  361 TNPAPAPSKS PEEMRKLFIQ RAKKIDKISR IGFPMAFLIF NMFYWIIYKI VRREDVHNK

Type	Start	End	Confidence
Cytoplasmic	1	249	0.53
Transmembrane Helix	250	271	0.92
Non-Cytoplasmic	272	312	0.50
Transmembrane Helix	313	335	0.88
Cytoplasmic	336	387	0.79
Transmembrane Helix	388	408	0.87
Non-Cytoplasmic	409	419	0.77