YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56585183
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWLARDSCV AAVILLLTVL SPPVALVRDP TPRFLEQYKS ECYFYNGTQR VRLLVRYIYN  60
   61 REEYTRFDSD VGEFRAVTEL GRRDTICRHN YEISDRFLVP RTVEPKVTVY PSKTQPLKHH 120
  121 NLLVCSVSDF YPGSVEVRWF RNGEEEKDGL VSTGLIPNGD WTFQLLVMLE MVPQGGEVYT 180
  181 CQVEHPSLTS PVRVEWKAQS TSAQNKKMSG VGGIVLGLLF LGAGLFVYFR NQKGQSGLQP 240
  241 TGLLN

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	207	0.99
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	245	0.92