YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56789183
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTALSNSA WITSLLSWVA VFLLGTSSAH SGVVQSPRHI IKEKGGRSIL KCIPISEHNN  60
   61 VAWYQQTHGQ ELKFLIQHYE KSEREKGNLP SRFSVQQFDD YHSEMNMSAL ELEDSAMYFC 120
  121 ASSPGGLVQE TQYFGPGTRL LVLEDLKTVT PPKVSLFEPS EAEIADKQKA TLVCLARGFF 180
  181 PDHVELSWWV NGKEIRNGVS TDPQAYKESN NITYCLSSRL RVSAPFWHNP RNHFRCQVQF 240
  241 YGLTEEDNWS EDSPKPVTQN ISAEAWGRAD CGITSASYHQ GVLSATILYE ILLGKATLYA 300
  301 VLVSALVLMA MVKKKNS

Type	Start	End	Confidence
Signal Peptide	1	31	0.97
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	290	0.99
Transmembrane Helix	291	312	0.66
Cytoplasmic	313	317	0.70