YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49175343
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APRTLILLLS GALALTETWA GSHSLRYFST AVSRPGRGEP RFIAVGYVDD TQFVRFDSDA  60
   61 ESPRMEPRAR WIEQQGPEYW EEQTRRAKGH AQTDLGGLGI LRGYYNQSEA GSHTYQRMSG 120
  121 CDVGPDDGRL LRGYYQRAYD GKDYIALNED LRSWTAADVA AQKTQRKWEA ALAAEQLRAY 180
  181 LEGECLEWLR RYLENGKETL QRADPPKTHV THHPISNHEA TLRCWALGFY PAEITLTWQR 240
  241 DGEDQTQDTE LVETRPGGDG TFQKWGAVVV PSGEEQRYTC HVQHEGLPEP LTLRWEPSSQ 300
  301 STIPIVGIVA GLAVLAVVVI GAVVAAVMHR RKSSGGKGGS YSQAVSSDSA QGSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	302	0.95
Transmembrane Helix	303	327	0.91
Cytoplasmic	328	354	0.97