YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OTOP1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.99
Transmembrane Helix	55	77	0.87
Non-Cytoplasmic	78	84	0.85
Transmembrane Helix	85	106	0.92
Cytoplasmic	107	123	0.96
Transmembrane Helix	124	144	0.91
Non-Cytoplasmic	145	155	0.62
Transmembrane Helix	156	180	0.76
Cytoplasmic	181	194	0.84
Transmembrane Helix	195	214	0.88
Non-Cytoplasmic	215	263	0.94
Transmembrane Helix	264	284	0.88
Cytoplasmic	285	302	0.92
Transmembrane Helix	303	326	0.93
Non-Cytoplasmic	327	341	0.93
Transmembrane Helix	342	364	0.94
Cytoplasmic	365	384	0.95
Transmembrane Helix	385	406	0.70
Non-Cytoplasmic	407	414	0.62
Transmembrane Helix	415	437	0.62
Cytoplasmic	438	518	0.96
Transmembrane Helix	519	538	0.90
Non-Cytoplasmic	539	552	0.88
Transmembrane Helix	553	571	0.86
Cytoplasmic	572	586	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEHGGTDSM WLNKYNPAAA SSASSSSSSD AENKLFSRLK VSLTKKYPQK NAELLSAQYG  60
   61 TNLLLLGVSV MLALAAQSGP VKEEHLLSFI TVLMLVQLVW MLCYMIRRER ERSPVPERDA 120
  121 HAGASWIRGG LTMLALLSLI MDAFRIGYFV GYHSCISAAL GVYPIVHALH TISQVHFLWF 180
  181 HIKDVIKKYE TFERFGVIHA VFTNLLLWCN GVMSETEHFM HNHRRRLIEM GYANLSTVDV 240
  241 QPHCNCTTSV CSMFSTSLYY LYPFNIEYHI FVSAMLFVMW KNIGRTLDRH SNRKRRSTGS 300
  301 TGLLLGPLGG LVALASSVSV LVVYLIHLEK TEEMHEAAVS MFYYYGVAMM ACMCVGSGTG 360
  361 LLVYRMENRP MDTGSNPART LDTELLLASS LGSWLMSWCS VVASVAEAGQ KSPSFSWTSL 420
  421 TYSLLLVLEK CIQNLFIVES LYRRHSEEEE DAAAPQVFSV AVPPYDGILN HGYEAHDKHR 480
  481 EAEPAAGSHA LSRKQPDAPL PAGQRLDVTP GRKRQILKNI CMFLFMCNIS LWILPAFGCR 540
  541 PQYDNPLENE TFGTSVWTTV LNVAIPLNLF YRMHSVASLF EVFRKV