YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56270239, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAVKMEGH EHAADWSTYY GEPECYTSVS NMNTGLGMNS MNTYMTMSGM SSTANMTAAN  60
   61 TMNMSYVNTG MSPSMTGMSP GTGAMAGMGA GMTGMSAALS PTMSPMAAQA PSMNALTSYS 120
  121 NMNAMSPMYG QSNINRSRDP KTYRRSYTHA KPPYSYISLI TMAIQQSPSK MLTLSEIYQW 180
  181 IMDLFPFYRQ NQQRWQNSIR HSLSFNDCFL KVPRSPDKPG KGSFWTLHPD SGNMFENGCY 240
  241 LRRQKRFKCD KKLSKDPSRK TSEGGSNSSS ESCNGNESPH SNSSSNEHKR SLSDMKSGQG 300
  301 LSPDHAASPT SQAQHLLAQH HSVLAHEGHL KPEHHYSFNH PFSINNLMSS EQQHHKMDLK 360
  361 TYEQVMHYGY GSPMAGTLSM GSMASKAGLD SPDTSYYQGV YSRPILNSS

Type	Start	End	Confidence
Cytoplasmic	1	41	0.72
Transmembrane Helix	42	62	0.56
Non-Cytoplasmic	63	80	0.57
Transmembrane Helix	81	103	0.74
Cytoplasmic	104	409	0.48