YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56236078, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKREHLGLG FFEWQIILWL SIWLAISQQA LGLRPIREKP RSWSDEWLFG RKQEAEVGPF  60
   61 SAWNITGTYR GTWKFLNSLN SSSKFQDFQK ENGNSVVELV AVPTKITGVH YVQGVVVFHD 120
  121 VFDNEQNVGG AQINLEGVYI WPFRQLRLVA NSGKESDSGQ EDNNLLSNPY HLLGIFSSQV 180
  181 FQESPRDRLL KRKLSPVNEM EKHCNIEIAA QVSRVASSEN NGDKNYYHME GLMESPGVGD 240
  241 DGDCFSPLLL NATSVNVEVY YNKAVNYTLM VTFVSFLQVL LLIRQMEHGN TQSGAAKVSI 300
  301 VMIGQQAIMD AYLCLLHLTA GILVESLFNA FATAAFFKFV VFSIFEMRYL LAIWKATRPS 360
  361 NSGEGWETMR RELSFLYSRF YGILLGGILI MYQFHNYMQP ILLLMYSFWI PQIVANVVRD 420
  421 SRKPLHPYYI LGMTATRLAI PLYVFGCPHN FMRVEPNKVW CICLCTFMGL QAVILLLQHY 480
  481 FGSRCFVPRQ MLPEKYNYHR RFNRDVSRTT DCVICMTAID LRQHTSDCMV TPCEHFFHSG 540
  541 CLQRWMDIKM ECPTCRRSLP PA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.54
Transmembrane Helix	9	32	0.59
Non-Cytoplasmic	33	263	0.84
Transmembrane Helix	264	283	0.75
Cytoplasmic	284	299	0.68
Transmembrane Helix	300	321	0.69
Non-Cytoplasmic	322	329	0.64
Transmembrane Helix	330	352	0.83
Cytoplasmic	353	374	0.93
Transmembrane Helix	375	395	0.91
Non-Cytoplasmic	396	400	0.75
Transmembrane Helix	401	418	0.56
Cytoplasmic	419	426	0.50
Transmembrane Helix	427	447	0.81
Non-Cytoplasmic	448	458	0.43
Transmembrane Helix	459	482	0.91
Cytoplasmic	483	562	0.52