YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55982653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDVEVAEH GSFSAKDYHD PPPAPLFDSV ELTKWSFYRA LIAEFIATLL FLYITVLTVI  60
   61 GYKSQTAGGD PCGGVGILGI AWSFGGMIFI LVYCTAGISG GHINPAVTFG LFLARKVSLI 120
  121 RAILYMVAQC LGAICGVGLV KAFQSAYYDR YGGGANELST GYSKGTGLGA EIIGTFVLVY 180
  181 TVFSATDPKR SARDSHVPVL APLPIGFAVF MVHLATIPIT GTGINPARSL GAAVIYNNEK 240
  241 AWDDQWIFWV GPFIGAAIAA FYHQFILRAG AVKALGSFRS TTHV

Type	Start	End	Confidence
Cytoplasmic	1	39	0.93
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	77	0.83
Transmembrane Helix	78	103	0.81
Cytoplasmic	104	121	0.79
Transmembrane Helix	122	143	0.93
Non-Cytoplasmic	144	164	0.89
Transmembrane Helix	165	184	0.92
Cytoplasmic	185	196	0.86
Transmembrane Helix	197	217	0.89
Non-Cytoplasmic	218	245	0.89
Transmembrane Helix	246	266	0.93
Cytoplasmic	267	284	0.92