YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.88
Transmembrane Helix	30	51	0.81
Non-Cytoplasmic	52	142	0.96
Transmembrane Helix	143	163	0.93
Cytoplasmic	164	172	0.86
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	200	0.63
Transmembrane Helix	201	219	0.91
Cytoplasmic	220	228	0.79
Transmembrane Helix	229	251	0.91
Non-Cytoplasmic	252	256	0.80
Transmembrane Helix	257	276	0.95
Cytoplasmic	277	342	0.95
Transmembrane Helix	343	363	0.87
Non-Cytoplasmic	364	372	0.84
Transmembrane Helix	373	395	0.81
Cytoplasmic	396	404	0.76
Transmembrane Helix	405	423	0.92
Non-Cytoplasmic	424	428	0.78
Transmembrane Helix	429	451	0.82
Cytoplasmic	452	461	0.76
Transmembrane Helix	462	483	0.85
Non-Cytoplasmic	484	488	0.71
Transmembrane Helix	489	510	0.84
Cytoplasmic	511	535	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEDLLDKV GGFGPFQLRN LVLMALPRML LPMHFLLPVF MAAVPAHHCA LPGAPANLSH  60
   61 QDLWLEAHLP RETDGSFSSC LRFAYPQTVP NVTLGTEVSN SGEPEGEPLT VPCSQGWEYD 120
  121 RSEFSSTIAT EWDLVCQQRG LNKITSTCFF IGVLVGAVVY GYLSDRFGRR RLLLVAYVSS 180
  181 LVLGLMSAAS INYIMFVVTR TLTGSALAGF TIIVLPLELE WLDVEHRTVA GVISTVFWSG 240
  241 GVLLLALVGY LIRSWRWLLL AATLPCVPGI ISIWWVPESA RWLLTQGRVE EAKKYLLSCA 300
  301 KLNGRPVGEG SLSQEALNNV VTMERALQRP SYLDLFRTSQ LRHISLCCMM VWFGVNFSYY 360
  361 GLTLDVSGLG LNVYQTQLLF GAVELPSKIM VYFLVRRLGR RLTEAGMLLG AALTFGTSLL 420
  421 VSLETKSWIT ALVVVGKAFS EAAFTTAYLF TSELYPTVLR QTGLGLTALM GRLGASLAPL 480
  481 AALLDGVWLL LPKVAYGGIA LVAACTALLL PETKKAQLPE TIQDVERKST QEEDV