YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50845197
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVFAVPI FFICFRECVE TSIIVSVLLS FIKQTLGQEQ DATTRKRLIR QVWWGVAIGL  60
   61 FISVCIGAGM IGAFYGYGKD HFASTEDLWE GIFSLIASVI ITIMGAALLR VTKLQEKWRV 120
  121 KLAQALEAKP LTGGTFKNNL KLWAEKYAMF LLPFITVLRE GLEAVVFIGG VSLSFPATAF 180
  181 PLPVFTGILA GVAIGYLLYR GGNQASLQIF LIISTCILYL VAAGLFSRGV WYLENNTWNH 240
  241 VIGGDAAETG AGPGSYDIRQ SVWHVNCCSP LVNGGGGWGI FNAILGWTNS ATYGSVLSYN 300
  301 LYWIAVIVWF VAMRHKERHG RLPVVDPLLN RLRGRKSAEP GNGEQDVEVS TIPSDLQTES 360
  361 KIPKSGASLV

Type	Start	End	Confidence
Cytoplasmic	1	51	0.80
Transmembrane Helix	52	75	0.93
Non-Cytoplasmic	76	90	0.90
Transmembrane Helix	91	112	0.93
Cytoplasmic	113	146	0.98
Transmembrane Helix	147	171	0.79
Non-Cytoplasmic	172	178	0.70
Transmembrane Helix	179	199	0.94
Cytoplasmic	200	208	0.77
Transmembrane Helix	209	230	0.91
Non-Cytoplasmic	231	290	0.86
Transmembrane Helix	291	312	0.91
Cytoplasmic	313	370	0.96