YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MC3R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSCCPSSS YPTLPNLSQH PAAPSASNRS GSGFCEQVFI KPEVFLALGI VSLMENILVI  60
   61 LAVVRNGNLH SPMYFFLCSL AAADMLVSLS NSLETIMIVV INSDSLTLED QFIQHMDNIF 120
  121 DSMICISLVA SICNLLAIAV DRYVTIFYAL RYHSIMTVRK ALSLIVAIWV CCGICGVMFI 180
  181 VYSESKMVIV CLITMFFAMV LLMGTLYIHM FLFARLHVQR IAALPPADGV APQQHSCMKG 240
  241 AVTITILLGV FIFCWAPFFL HLVLIITCPT NPYCICYTAH FNTYLVLIMC NSVIDPLIYA 300
  301 FRSLELRNTF KEILCGCNGM NVG

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.56
Transmembrane Helix	44	64	0.79
Cytoplasmic	65	72	0.60
Transmembrane Helix	73	93	0.69
Non-Cytoplasmic	94	118	0.82
Transmembrane Helix	119	140	0.87
Cytoplasmic	141	160	0.81
Transmembrane Helix	161	182	0.95
Non-Cytoplasmic	183	188	0.81
Transmembrane Helix	189	211	0.93
Cytoplasmic	212	241	0.88
Transmembrane Helix	242	265	0.87
Non-Cytoplasmic	266	279	0.80
Transmembrane Helix	280	301	0.80
Cytoplasmic	302	323	0.86