YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60617257
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGRSL EQTPTWAVAV VCFALVAISV VIEFIIHLIG KWLKSKQKRA LYEALEKIKS  60
   61 ELMLLGFISL LLTVGQDPIS NICVSEKIAS TWHPCTKQKE NEINKEKSDD LEGHRRRLLT 120
  121 ASDGGVRRVL AAVGTDKCAD KGKVAFVSAD GIHQLHIFIF VLALFHIFYC ITTLALGRAK 180
  181 MSSWKAWENE TRTAEYQFTN DPERFRFARD TSFGRRHLSF WTKNSVLLWI VCFFRQFVRS 240
  241 VPKVDYLTLR HGFIMAHLAP QSQINFDFQK YIKRSLEEDF KVVVSISPPI WFLAVLFLLF 300
  301 NTHGWYSYLW LPFIPLFVIL LVGTKLQVII TKMGLRIQER GEVVKGVPVV QPGDDLFWFN 360
  361 RPRLLLYLIN FVLFQNAFQL AFFAWTWYEF GLKSCFHDKT EDIVIRMTMG VLIQILCSYV 420
  421 TLPLYALVTQ MGSSMKPTIF NERVATALRK WHHGAKKHIK EINKHHSNPA TPMSSRPTTP 480
  481 THGMSPVHLL RGIRTSDMDV SPQRSNYNVD HWDIEGSSSP TRFYQGGGGD GSSSPSHMHQ 540
  541 IIQSGHDLRH DDSEGHEPSL PQTARDQHEV NIARPREFSF DKRTTSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.92
Transmembrane Helix	16	39	0.93
Cytoplasmic	40	57	0.90
Transmembrane Helix	58	76	0.81
Non-Cytoplasmic	77	154	0.92
Transmembrane Helix	155	177	0.92
Cytoplasmic	178	279	0.90
Transmembrane Helix	280	300	0.92
Non-Cytoplasmic	301	307	0.76
Transmembrane Helix	308	329	0.91
Cytoplasmic	330	365	0.94
Transmembrane Helix	366	387	0.91
Non-Cytoplasmic	388	406	0.89
Transmembrane Helix	407	428	0.85
Cytoplasmic	429	587	0.94