YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60416493
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEITAEGNA SITTTVIDNK NGSVPKSPGK VLKRTVTEDI VTTFSSPAAW LLVIALIITW  60
   61 SAVAIVMFDL VDYKNFSASS IAKIGSDPLK LVNDVVEETT DWIYGFFSLL SDIISSDGDE 120
  121 DDEDADEDID KGEIEEPPLK RKDIQKEKAE KQEKPEKKIQ TKVSHREKEK GKEKLKGEKP 180
  181 EKKATHKEKL EKKERTETKM AAKEDKKIKT KEKTEEKAKK EMKVGKQEKA KPAAAKAKET 240
  241 PKTTPKAREK DDKETPAVPK HEQKDQYAFC RYMIDMFVHG DLKPGQSPAV PPPSLTASRP 300
  301 ALSTPSLEEK EKEEKKKVEK KVTSDTKKKE KGEAKKKSEK ETVIDGKGKE PGKPPETKQT 360
  361 TTKLTTQAAA TKDEKKEDSK KMKKPPEEKP KGKKQEKKEK HIEPAKTPKK EHPAPSEKHR 420
  421 KAKAEQAKEE IAPASTKKGK HS

Type	Start	End	Confidence
Cytoplasmic	1	47	0.81
Transmembrane Helix	48	71	0.83
Non-Cytoplasmic	72	442	0.89