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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62733536
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALNELCDL VAAHPDLLLA DKLAWLASRC GAPPASASAS AQRASRAHLH SLLALARLLP  60
   61 AGAGAGSSLP APLLAFLASH AFLSPSFWPQ SFAPAPFLSR LLPLLAAAPT CPALSSALSA 120
  121 ALLAALDVAD PASAPLARAF LSAAAASPPT LLPADAAPVA SRLLLEFAGS EEAPPKAKGK 180
  181 GEYAAGEENG GVREVVQKFE EEEVEELERK EVAFRLIVHV LGGEGGLESD NVAKVRNAAA 240
  241 KQVRSLSEFL KIRKRDWREQ GAQLKTRINT KLLCCQAAVV VLVRSVSAMD VDSKASKDML 300
  301 QQTLAWFIEA TKSCILSSWR KLKICEELFC TLLNVVKLSC EIIEFGWTKD RALVDTFIMR 360
  361 LAAYVRERND YEEEDGKEKD AVPVMRLNVI RLLAELCVCL KKWEVVDMIL PLFIEHLEEG 420
  421 DASSPSLLRL RLLDAISRVA CLGFEKSYRE SIVLMTRSYL DKAKAVGSAE NNTVPSEATT 480
  481 ERIETLPAGF LLVATNLTST KLRSDYRHRL LSLCSDVGLA AESKSGRSGA DLMGPLLPAV 540
  541 AEICSDFDPV STVEPSLLKL FRNLWFYIVL FGLAPPIQSN QTPAKPVSTS LNTMESISAI 600
  601 ALQAVSGPYM WNSEWCVAVQ RIAQGTPPLV VSSVKWLEDE LELNALHNPG SRRGNSNEKA 660
  661 AVGQRTALSA ALGSRVEVAA MTTISGVKAT YLLAVAFLEI LRFSCNGGIL SATSTLNKSN 720
  721 SAFSCVFEYL LTPNLTPAVS QCLTAVVHRA FETVLSWMED RICDIGEGAD IRESVISVHA 780
  781 CFLIKSMSQR DENVRDVSVK LLTQLKEKFP QVLWNSSCVD LLLISVHNEL TSGPVSDPAW 840
  841 VATVRSLYQK IAREWITSAL SYAPCTTQGL IQMFAQWSQV LQSSQPNLKR FKCLIGSFST 900
  901 GILKMIMENF CKPSGAQRSQ HTADVVSLLS EIRICSGKND WNGIRTANVP AVMDSAAAAS 960
  961 GAKKEAPDIT LEVLSTAVVT ATVKCNHAGE IAGMRRLFSS MGGMNTGMSP LGMQSAQPNQ1020
 1021 SFDEVFLSRF VRLLQDFVVT AEKNQIDNTV FRETCSQSTA LLLDHMVSDS RANLDGFSQL1080
 1081 IRLLCWCPAY ICTPDAMETG IFIWTWLVSA APSLGPLVLA ELVDAWLWTI DTKCGLFASD1140
 1141 MNYCGPDAKL RPHLISGEPE APPEKDPVEA IIAHRLWLGF FIDRFEVVRH DSIEQLLLLG1200
 1201 RMLQGTMKSA THFSHHPAAT GTFFTAMLLG LKFCSCQSQS NLQKCNMGLQ LLEDRVYRAA1260
 1261 LGWFAYAPEW YESQNKSFAQ REAQSVSIFV HCLQNERPSG SADSAPKSQG REGEPNMYRP1320
 1321 LVMTVIGMWM RSKYVVAWCR EPMLDQNHPV WGSVDNYTTV REKRKQLLLM LSQNEADRLE1380
 1381 VWAQPINTKD AATFRGKISS DKWIDHARTA FAVDPRIAFS MIMRFPTNSA LSSEITQLVQ1440
 1441 THILELRTIP EALPFFITPK AVDENSSLLQ QLPHWAPCSV TQALEFLTPP YKGHPRVMAY1500
 1501 VLRVLETYPP ETVTFFMPQL VQSLRYDDDK LVEGYLLGAA RRSNIFAHIL IWHLQGECVP1560
 1561 DEPGKEAAAP KATAFHSLLP AVREKIVDGF TPEARDMFER EFEFFDKVTS ISGVLFPLPK1620
 1621 EERRAGIKRE LEKITVPGDD LYLPTATNKF VRGIQVDSGI PLQSAAKVPI MITFNVVDRD1680
 1681 GDPNDVKPQA CIFKVGDDCR QDVLALQVIA LLRDIFQAVG LNLYLFPYGV LPTGPERGII1740
 1741 EVVPNTRSRN QMGETTDGGL LEIFQQDYGP VGSPSFEAAR EMFMISSAGY AVASLLLQPK1800
 1801 DRHNGNLLFD SHGRLVHIDF GFILEISPGG NMGFESAHFK LSHEMTQLLD PSGTMKSDTW1860
 1861 NQFLRLCVKG YLAGRRHMNG IITTVNLMVD SGLPCFSRGE PIANLRKRFH PEMNEREAAN1920
 1921 FMVRTCVDAY NKWTTAGYDL IQYLQQGIEK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle