YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACD1_CANLF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSEEDGTN GGASEAGEEK EAPGRRRRLG LLATVWLTFY NIAMTAGWLV LAIAMVRFYM  60
   61 EKGTHKGLYK SIQKTLKFFQ TFALLEIVHC LIGIVPTSVI VAGVQVSSRI FMVWLITHSI 120
  121 KPIQNEESVV LFLVAWTVTE ITRYSFYTFS LLDHLPYFIK WARYNFFIIL YPVGVVGELL 180
  181 TIYAALPYVK KTGMFSIRLP NKYNVSFDYY YFLLITMASY IPLFPQLYFH MLRQRRKVLH 240
  241 GEVIVEKDD

Type	Start	End	Confidence
Cytoplasmic	1	31	0.84
Transmembrane Helix	32	55	0.86
Non-Cytoplasmic	56	84	0.80
Transmembrane Helix	85	107	0.86
Cytoplasmic	108	165	0.68
Transmembrane Helix	166	186	0.94
Non-Cytoplasmic	187	208	0.68
Transmembrane Helix	209	229	0.92
Cytoplasmic	230	249	0.71