YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66947649
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYVLLFSSH FFVCETPFSF FIYSSTFNPI ISSPPFSGVL CYYVFYVVTN RMIIVVTPTY  60
   61 KRMTRIADML RMANTLSHVK DLHWIVIEDG NKTIPAVQDI LDRTGLPYTY QAHKTALGYP 120
  121 RRGWYQRTMA LKLIRSNTSQ ILGQDHQEGV VYFGDDDNSY DIRLFTDYIR NVKTLGIWAV 180
  181 GLVGGTVVEA PKVVDGKVTA FNVKWNPKRR FAVDMAGFAV NLKVVLNSDA VFGTSCKRGG 240
  241 GAPETCLLED MGLEREDIEP FGYEKTKDRE IFVWHTKTST PNIVQSKKNQ TKPVPPPDTF 300
  301 GYFVEV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	27	0.57
Non-Cytoplasmic	28	38	0.69
Transmembrane Helix	39	55	0.52
Cytoplasmic	56	306	0.54