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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119611336, gi...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGFLARPFL STNQHLAQWG SPLPQGKGLV QLPSQHTRHS RPFHELCSKE ENSATVPKLI  60
   61 SLVVSSETID FSNKTMDSRR DWEREKRILE GKLQLPKALA RTQRARDEGR RAWTSRWLQR 120
  121 RRSPESCEAP LSAPLWGPQR GLPGREPLRS RSASAIALRT IGHILALLLR LLHLGLGSGG 180
  181 CREDVPPSGR GKKEEKMKKH RRALALVSCL FLCSLVWLPS WRVCCKESSS ASASSYYSQD 240
  241 DNCALENEDV QFQKKNTESK KLSPPVVETL PTVDLHEESS NAVVDSETVE NISSSSTSEI 300
  301 TPISKLDEIE KSGTIPIAKP SETEQSETDC DVGEALDASA PIEQPSFVSP PDSLVGQHIE 360
  361 NVSSSHGKGK ITKSEFESKV SASEQGGGDP KSALNASDNL KNESSDYTKP GDIDPTSVAS 420
  421 PKDPEDIPTF DEWKKKVMEV EKEKSQSMHA SSNGGSHATK KVQKNRNNYA SVECGAKILA 480
  481 ANPEAKSTSA ILIENMDLYM LNPCSTKIWF VIELCEPIQV KQLDIANYEL FSSTPKDFLV 540
  541 SISDRYPTNK WIKLGTFHGR DERNVQSFPL DEQMYAKYVK VELLSHFGSE HFCPLSLIRV 600
  601 FGTSMVEEYE EIADSQYHSE RQELFDEDYD YPLDYNTGED KSSKNLLGSA TNAILNMVNI 660
  661 AANILGAKTE DLTEGNKSIS ENATATAAPK MPESTPVSTP VPSPEYVTTE VHTHDMEPST 720
  721 PDTPKESPIV QLVQEEEEEA SPSTVTLLGS GEQEDESSPW FESETQIFCS ELTTICCISS 780
  781 FSEYIYKWCS VRVALYRQRS RTALSKGKDY LVLAQPPLLL PAESVDVSVL QPLSGELENT 840
  841 NIEREAETVV LGDLSSSMHQ DDLVNHTVDA VELEPSHSQT LSQSLLLDIT PEINPLPKIE 900
  901 VSESVEYEAG HIPSPVIPQE SSVEIDNETE QKSESFSSIE KPSITYETNK VNELMDNIIK 960
  961 EDVNSMQIFT KLSETIVPPI NTATVPDNED GEAKMNIADT AKQTLISVVD SSSLPEVKEE1020
 1021 EQSPEDALLR GLQRTATDFY AELQNSTDLG YANGNLVHGS NQKESVFMRL NNRIKALEVN1080
 1081 MSLSGRYLEE LSQRYRKQME EMQKAFNKTI VKLQNTSRIA EEQDQRQTEA IQLLQAQLTN1140
 1141 MTQLVSNLSA TVAELKREVS DRQSYLVISL VLCVVLGLML CMQRCRNTSQ FDGDYISKLP1200
 1201 KSNQYPSPKR CFSSYDDMNL KRRTSFPLMR SKSLQLTGKE VDPNDLYIVE PLKFSPEKKK1260
 1261 KRCKYKIEKI ETIKPEEPLH PIANGDIKGR KPFTNQRDFS NMGEVYHSSY KGPPSEGSSE1320
 1321 TSSQSEESYF CGISACTSLC NGQSQKTKTE KRALKRRRSK VQDQGKLIKT LIQTKSGSLP1380
 1381 SLHDIIKGNK EITVGTFGVT AVSGHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle