YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57209640
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRDRAPRGVQ AARGRGGRSG IAPGSAAPRV RPRSRACLGP NHPGVSSPVE LTQPSGAAPG  60
   61 AEARRHSVPV LGSGNFEGNF ESLDLAEFAK KQPWWRKLFG QESGPSAEKY SVATQLFIGG 120
  121 VTGWCTGFIF QKVGKLAATA VGGGFFLLQL ANHTGYIKVD WQRVEKDMKK AKEQLKIRKS 180
  181 NQIPTEVRSK AEEVVSFVKK NVLVTGGFFG GFLLGMAS

Type	Start	End	Confidence
Cytoplasmic	1	111	0.69
Transmembrane Helix	112	130	0.51
Non-Cytoplasmic	131	135	0.69
Transmembrane Helix	136	156	0.51
Cytoplasmic	157	196	0.69
Transmembrane Helix	197	216	0.55
Non-Cytoplasmic	217	218	0.67