YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66347023
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSALQQSY LTRRANSFRG SAQLDSSADG AVKSPAAIFW LVIHGVCCLI SLVLGFRFSR  60
   61 LVFFFLFSTS LYTAPFRSGS EIAAPHDVPP AANRTAMLST ASRVVVGRHG IRIRPWPHPD 120
  121 PVEVMKAHRI IERVQREQRA LFGVKNPRTV IAVTPTHVRT FQTLHLTGVM HTLMLVPYDL 180
  181 VWIVVEAGGV TNETASIIAK SGLRTIHVGF SQRMPNSWEA RHKLESRMRL HALRIVRKEK 240
  241 LDGVVVFADD SNMHSMELFD EAQNVNWIGA VSVGILLHSD ESSYMVQSEE EGASMPVQGP 300
  301 ACNATDKLVG WHTFNSLRYT GRSAVYIDDR APVLPRKLEW SGFVLNSWLV WKDADGKPEW 360
  361 VKDLDELGWV DEEIESPLSL LKSTSVVEPL GNCGRQVLLW WLRVEARTDS KFPSRWIIDP 420
  421 PLDITIPSKR TPWPDAPPEL PSNEKVLTNT QEQTNKPSTR TKSPRSRRSR SKKKHDTKVI 480
  481 GVQVSTHSEQ N

Type	Start	End	Confidence
Cytoplasmic	1	36	0.89
Transmembrane Helix	37	58	0.91
Non-Cytoplasmic	59	491	0.94