YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56316150, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLRIFLVT TFIASLPLFI FVTFYNGTST LQIKWRQYYY WLNQGQVAGS LLTIVEPEPT  60
   61 NSSALTDILA NTTTMRLDPF ETLSTPLPIM DKHKFTSLPH WKFDDLYRLD PHFKPSECAT 120
  121 SLQNSSNPTF KKKFIPNIQL FLQSDHLNMS EWNRLYHFNN PFGYMGLNYT AIKAAVETIH 180
  181 KPASSQLLQV HPGVKDGCIR CAVVGASGIL NGSKLGKEID SSDYVFRMNA AIIAGHEEDV 240
  241 GKRTSVYVHT AHSIIQSLMI HKKRGFKQIP TDKDIKYVLI PEGPRDYNFL ESLMKNRKIP 300
  301 SGAYRGRTPR KYYSGHFNES SYYILHPDFL RYVRNRFLRA KQLKTKRWWV VRPTNGAFTL 360
  361 LLAMHTCDIV RVYGFCTADY RKYPSYYYDT KHTKLVFYGN HDYRLEMKTW KKFHDDKLIW 420
  421 MYLGKSN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.67
Transmembrane Helix	7	27	0.80
Non-Cytoplasmic	28	427	0.92