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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GNPTA_DANRE
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVNSLLKL LQRQTYTCLS HRYGLYLCFG GLVLMIVSAF QFGEVVVEWS RDQYHVLFDS  60
   61 YRDNVAGKSF QTRLCLPMPI DVVYTWVNGT DINLLKDLRA VRQRLEEEQK ALRERLGKNG 120
  121 SEITEAPKGR PECLLSHCIM GPVLVLDPAL PANITVKELP TLSAAFSSAK ELLQVAKPLH 180
  181 PSSSVTALLF HSHTEAEKAH ADALKDLLTH SISRGYLTTD KEAPGLVRMH TLAYLSGFPA 240
  241 SLKETEQLRV KLPAVVTSKT KKLQLYSEAS IALLHLNTAQ DFTDLTQQAK KNLTLDGKEL 300
  301 TVSSAFLFWD LTAISQSKQD EDVSASRFED NEELRYSLRS IEKHAPWVRH IFIVTNGQIP 360
  361 SWLNLDNPRV SVVTHQDIFQ NQTHLPTFSS PAIETHIHRI PGLSQKFIYL NDDVMFGKDV 420
  421 WPDDFYSHSK GQKVYLTWPV PNCAEGCPGS WIKDGYCDKA CNNSACDWDG GDCQGSSRFG 480
  481 GAGGSVIGGG QPWQFAGGLG GLAGMSFCNQ GCANSWLADK FCDQACNVLA CGFDVGDCGQ 540
  541 DNLNQLHRIV LRRNQTLYTL PQGELRPYFS FSGLANRVSE AHVADNQVLR HTSVANKWKT 600
  601 IHLLLLPGHN ATQIHYNITF QSTDHHDFIM TFSVSVDTRE LPKSNTSTPV RDKEEEPKPT 660
  661 VATPEPEVPF EAVPKEKQGP KVREQTHGDV QVPVLNETLL PDEVKIELKK LNEKLMSGDI 720
  721 TIKGFNLTKA MLLEPYKEKD QFTLKHEKDK EEKQKLSPVA QLQNERAAAR VKREKGENVD 780
  781 QLKPVAPSLV PVQIDDVTTK AQSRLFNIEK PHMFHLLSNL KGNLSKERDS DSEGHLRERP 840
  841 TGRRLQFYSD SLNRGFLPWE KRKFFQDLME EVNRLQTELQ YTADRTATGR RLQDTFADSL 900
  901 RYVNRLLNAQ FGFTSRKVPA HMPHMIDRLI MQELQDTFPQ EFDKTSSHRV RHSEDMQFAF 960
  961 SYFYFLMSAV QQLNISEVFD EIDTDHSGVL SDREIRTLAT RIHELPLSLQ DLTSLEQMLI1020
 1021 NCSKSLPSNL THLHAVSPTQ EAYYDPSMPP VTKGLVIHCK PITERIHKAF KDQNKYKFEI1080
 1081 MGEEEIAFKM IRTNVSHVVG QLDDIRKNPR KFICLNDNID HIHKDAGTVK AVLRDFYESM1140
 1141 FPLPSQFELP REYRNRFLHM TELQEWRIYR DKLKFWTHCV LVTLVVFTVM SFFAEQLVML1200
 1201 KRWLFPRRRV SKDANPERV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle