YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207680
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNRNMDHTFS EDTAVYENFT EDWTSDGGET VHFIIQCVIP SVYILIITVG LLGNITLVKI  60
   61 FITTSAMRSV PNIFISSLAV GDLLLLVTCV PVDAFRYFYE EWIFGTVACK MIPVIQLTSV 120
  121 GVSVFTLTAL SADRHKAIVN PMDIQSSSAV FWTCLKAITI WVVSVLLAIP EAVFSQVVHM 180
  181 PDKNTTFTAC VPYPLSNEMH PKIHSIMIFL VYFLIPLSII SVYYYHIART LIKSAHDMPG 240
  241 EISEHSKRQT ETRKRLAKIV LVFVGLFALC WFPNHVLYMY RSFNYRQIDS SLSHLIITLV 300
  301 ARVLSFSSSC VNPFALYLLS ESFRRHFNNQ LLCRQRKYQE RNTSYLQSTS AIRMTSIRKS 360
  361 TPAVANGHGQ KQGVCI

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.95
Transmembrane Helix	33	58	0.80
Cytoplasmic	59	72	0.76
Transmembrane Helix	73	95	0.88
Non-Cytoplasmic	96	111	0.80
Transmembrane Helix	112	131	0.92
Cytoplasmic	132	148	0.93
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	202	0.94
Transmembrane Helix	203	226	0.90
Cytoplasmic	227	255	0.97
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	294	0.91
Transmembrane Helix	295	318	0.87
Cytoplasmic	319	376	0.96